PARAMS

The PARAMS section defines file paths and outputs as follows.

model_type

Selects the type of model that has been run. Currently the only option is nemo.

[PARAMS]
model_type: nemo

model_path

The path to the model output. The NetCDF readers will recursively find NetCDF files using model_path and either phys_files or bio_files. For examples, model_path/**/phys_files in glob speak.

[PARAMS]
model_path: /path/to/model/output

output_path

Path to which you want to save the output files too.

[PARAMS]
model_path: /path/to/model/output

mask_path

This is an optional nemo parameter, it is used to define the bottom level for NEMO runs.

[PARAMS]
mask_path: /path/to/model/mask

phys_files

This is used in conjunction with model_path to select the physics files from the model_path. It can be set as a constant string phys_file_name.nc or can use fuzzy searching amm7_1d_*_grid_T.nc. You can also give a list of file patterns

[PARAMS]
phys_files: physics_file_pattern1
            physics_file_pattern2
            

bio_files

This is used in conjunction with model_path to select the biogeochemical files from the model_path. It can be set as a constant string bio_file_name.nc or can use fuzzy searching amm7_1m_*_ptrc_T.nc. You can also give a list of file patterns

[PARAMS]
bio_files: biogeochemical_file_pattern1
           biogeochemical_file_pattern2

time_unit

This is used to select what time intervals the output is stored, it can be set to monthly or daily

[PARAMS]
time_unit: monthly

save_option

This is used to select how the output NetCDF file is stored:

• yearly: save variables into year chunks

• by_variable: save variables individually

• by_variable_type: save variables but SURFACE, INTEGRATE or BOTTOM

• by_phys_bio: saves all physics and biogeochemical variables into two NetCDF files, one for physics and the othe biogeochemical

• all: saves all variables into one file

[PARAMS]
save_option: all